Ｃ−２．原著論文（査読あり）

１．Kojima,S.and S.Ohta: Patterns of bottom environments and macrobenthos communities along the depth gradient in the bathyal zone off Sanriku,Northwestern Pacific.J.Oceanogr.Soc.Jap.45,95-105 (1989)
２．Kojima,S.and S.Ohta: Particulate organic carbon supply to the sea bottom:stable carbon isotope ratio analysis of the sediment trap samples at the mouth of Otsuchi Bay,Northeastern Japan. J. Oceanogr. Soc.Jap.45,361-368 (1989)
３．Kojima,S.and S.Ohta: Seasonal variations of the deep-sea macrobenthos communities in the coastal and bathyal zones off Sanriku, Northeastern Japan.J.Oceanogr.Soc.Jap.46,250-260 (1990)　
４．Kojima,S: Growth and grazed rates of bacterial communities in a bog as determined by the dilution method using a continuous culture system.Water,Air,and Soil Pollut.65,323-327 (1992)
５．Kojima,S.,T.Hashimoto,M.Hasegawa,S.Murata,S.Ohta,H.Seki and N.Okada: Close phylogenetic relationship between Vestimentifera (Tube worm) and Annelida revealed by the amino acid sequence of elongation factor-1α.J.Mol.Evol.37,66-70 (1993)
６．Shirayama,Y.and S.Kojima: Abundance of deep-sea meiobenthos off Sanriku,Northeastern Japan.J.Oceanogr. 50,109-117 (1994)
７．Utsumi,M.,S.Kojima,Y.Nojiri,S.Ohta and H.Seki: Biomass and production of bacterioplankton at the hydrothermal system of the North Fiji Basin.J.Oceanogr.50,635-642 (1994)
８．Ytoh N.,H.Seki,T.Mizusaki,S.Kojima and A.E.Batomalaque: Trophodynamic structure of a swampy bog at the climax stage of limunological succession.I.Primary production dynamics.Water,Air and Soil Pollut. 76,467-479 (1994)
９．Kojima,S.and K.Yamaguchi: Trophodynamic structure of a swampy bog at the climax stage of limunological succession.IV.Vertical migration and demersal behavior of large zooplankton.Water,Air,and Soil Pollut.76,501-505 (1994)
１０．Kojima,S.,T. Kobayashi,J.Hashimoto and S.Ohta: RFLP analysis of a mitochondrial gene,cytochrome oxidase I (COI) of three species of the genus Calyptogena around Japan.J. Oceanogr. 51, 257-259 (1995)
１１．Kojima,S.,R Segawa,T.Kobayashi,T.Hashimoto,K.Fujikura,J.Hashimoto,and S.Ohta: Phylogenetic relationships among species of Calyptogena (Bivalvia: Vesicomyidae) collected around Japan revealed by nucleotide sequences of mitochondrial genes.
	Mar.Biol.122,401-407 (1995)
１２．Kojima,S.,R.Segawa and S.Ohta: Molecular evidence that Calyptogena laubieri (Bivalvia: Vesicomyidae) is a valid species.Venus 54,149-152 (1995)
１３．長谷川貴志，山口寿之，小島茂明，太田　秀： ミトコンドリアＤＮＡを用いたクロフジツボ類の系統解析．Benthos Res.51,33-39 (1996)
１４．Okutani,T.,S.Kojima and J.Ashi: An unusual Vesicomyid Bivalve,Calyptogena nankaiensis n.sp.from bathyal depth off Honshu,Japan.Venus 55,257-263 (1996)
１５．Kojima,S.,R.Segawa,J.Hashimoto and S.Ohta: Molecular phylogeny of vestimentiferans collected around Japan revealed by the nucleotide sequences of mitochondrial DNA.Mar.Biol.127,507-513 (1997)
１６．Kojima,S.,R.Segawa and I.Hayashi: Genetic differentiation among populations of the Japanese turban shell Turbo (Batillus) cornutus corresponding to warm current.Mar.Ecol.Prog.Ser.150,149-155 (1997)
１７．Okutani,T.,S.Kojima and J.Ashi: Futher discovery of new taxon of vesicomyd clam from the Nankai Trough,	off Honshu,Japan.Venus 56,185-188 (1997)
１８．Kojima, S. and S. Ohta: Calyptogena okutanii n.sp.,sibling species of Calyptogen soyoae Okutani,1957 (Bivalvia: Vesicomydae).Venus 56,189-195 (1997)
１９．Kojima,S.and S.Ohta: Bathymetrical distribution of the species of the genus Calyptogena in the Nankai Trough,Japan.Venus 56,293-297 (1997)
２０．Kojima S: Paraphyletic status of Polychaeta suggested by phylogenetic analysis based on the amino acid sequences of elongation factor-1α.Mol.Phylogenet.Evol.9,255-261 (1998)
２１．Okurani T.,K.Fujikura and S.Kojima: Two new hadal bivalves of the family Thyasiridae from the plate convergent area of the Japan Trench.Venus 58,49-54 (1999)
２２．Fujikura,K.,S. Kojima,K.Tamaki,Y.Maki,J.Hunt and T.Okutani: The deepest chemosynthesis-based community yet discovered from the hadal zone,7326 m depth,in the Japan Trench.Mar.Ecol.Prog.Ser.190,17-26 (1999)
２３．Saito,M.,S.Kojima and K.Endo: Mitochondrial COI sequences of brachiopods: Genetic code shared with protostomes and limits of utility for phylogenetic reconstruction.Mol.Phylogenet.Evol.15,331-344 (2000)
２４．Okutani,T.,K.Fujikura and S.Kojima: New Taxa and review of vesicomyid bivalves collected from Northwest Pacific by deep sea research systems of Japan Marine Science & Technology Center. Venus 59,83-101 (2000)
２５．Fujikura,K.,S.Kojima,Y,Fujiwara,J.Hashimoto and T.Okutani: New distribution records of vesicomyid bivalves from chemosysnthesis-based communities in Japanese waters.Venus 59,103-121 (2000)
２６．Kojima,S.,R.Segawa and I.Hayashi: Stability of the courses of the warm coastal currents along the Kyushu Island suggested by the population structure of the Japanese turban shell Turbo (Batillus) cornutus.J.Oceanogr 56,601-604 (2000)
２７．Kojima,S.,R.Segawa,Y.Fujiwara,J.Hashimoto and S.Ohta: Genetic differentiation of populations of a hydrothermal vent-endemic gastropod, Ifremeria nautilei,between the North Fiji Basin and the Manus Basin revealed by nucleotide sequences of mitochondrial 
	DNA. Zool.Sci, 17,1167-1174 (2000)
２８．Fujiwara,Y.,S.Kojima,C.Mizota,Y.Maki and K.Fujikura: Phylogenetic characterization of the endosymbionts of the deepest-living vesicomyid clam,Calytogena fossajaponica,from the Japan Trench.Venus 59, 307-316 (2000)
２９．Puspasari,I.A.,T.Yamaguchi and S.Kojima: Phylogeny of barnacles of the Balanus amphitrite complex occurring in Japan (Cirripedia: Balanidae) infeered from mitochindrial COI gene necleotide sequences and morphology. Sessile Organisms 18, 7-17 (2001)
３０．Fujiwara,Y.,C.Kato,N.Masui,K.Fijikura and S.Kojima: Dual symbiosis in a cold seep thyasirid clam Maorithyas hadalis from the hadal zone in the Japan Trench, western Pacific. Mar. Ecol. Prog. Ser. 214,151-159 (2001)
３１．Kojima,S.,R.Segawa,Y.Fujiwara,K.Fujikura,S.Ohta and J.Hashimoto: Phylogeny of hydrothermal vent-endemic gastropods Alviniconcha spp. from the Western Pacific revealed by mitochoncdrial DNA sequences. Biol. Bull. 200, 298-304 (2001)
３２．Endo,K.,T.Owzawa and S.Kojima: Nuclear and mitochondrial gene sequences reveal unexpected genetic heterogeneity among northern Pacific populations of the brachiopod Lingula anatina. Mar. Biol. 139, 105-112 (2001) 
３３．Kojima,S.,S.Ohta,T.Yamamoto,T.Miura,Y.Fujiwara and J.Hashimoto: Molecular taxonomy of vestimentiferans of the Western Pacific and their phylogenetic relationship to species of the Eastern Pacific I. Family Lamellibrachiidae. Mar. Biol. 139, 211-219 (2001)
３４．Kojima,S.,R.Segawa,I.Hayashi and M.Okiyama: Phylogeography of a deep-sea demersal fish, Bothrocara hollandi, in the Japan Sea. Mar. Ecol. Prog. Ser. 217, 135-143 (2001) 
３５．Kojima, S., N. Ota, K. Mori, T. Kurozumi and T. Furota: Molecular phylogeny of Japanese gastropods in the genus Batillaria. J. Moll. Stud. 67, 377-384 (2001) 
３６．Fujikura, K., Y. Fujiwara, S. Kojima and T. Okutani: Micro-scale distribution of mollusks occurring in deep sea chmosynthesis-based communities in the Japan Trench. Venus 60, 225-236 (2002).
３７．Kojima,S.,S.Ohta,T.Yamamoto,T.Miura,Y.Fujiwara,K.Fujikura and J.Hashimoto: Molecular taxonomy of vestimentiferans of the Western Pacific and their phylogenetic relationship to species of the Eastern Pacific. II. Families Escarpiidae and Arcovestiidae. 
	Mar. Biol. 141, 57-64 (2002)
３８．Okutani,T., S.Kojima and N.Iwasaki (2002) New and known vesicomyid bivalves recently collected from the western and central Nankai Trough off Shikoku-Honshu, Japan by deep sea research systems of Japan Marine Science and Techinology Center. 
	Venus 61, 129-140 (2002)
３９．Kojima,S., S.Ohta, T.Yamamoto, T.Yamaguchi, T.Miura, Y.Fujiwara, K.Fujikura and J.Hashimoto: Molecular taxonomy of vestimentiferans of the Western Pacific and their phylogenetic relationship to species of the Eastern Pacific. III. Alaysia-like
	 vestimentiferans and relationships among families. Mar. Biol. 142, 625-635 (2003)
４０．Kojima,S., S.Kamimura, T.Kimura, I.Hayashi, A.Iijima and T.Furota: Phylogenetic relationships between the tideland snails Batillaria flectosiphonata in the Ryukyu Islands and B. multiformis in the Japanese Islands. Zool. Sci. 20, 1423-1433 (2003)
４１．Kojima,S., K.Fujikura, T.Okutani and J. Hashimoto: Phylogenetic status of Alviniconcha gastropods from the Indian Ocean (Provannidae: Mollusca) revealed by nucleotide sequences of mitochondrial DNA. Venus 63, 65-68 (2003)
４２．Watanabe,H., R.Kado, S.Tsuchida, H.Miyake, M.Kyo and S.Kojima: Larval development and intermoult period of the hydrothermal vent barnacle Neoverruca sp. J. Mar Biol Ass UK 84, 743-745 (2004)
４３．Kojima,S., K.Fujikura and T.Okutani: Multiple trans-Pacific migrations of deep-sea vent/seep-endemic bivalves in the family Vesicomyidae. Mol. Phylogenet. Evol. 32, 396-406 (2004)
４４．Kojima,S., I.Hayashi, D.Kim, A.Iijima and T.Furota: Phylogeography of an intertidal direct-developing gastropod, Batillaria cumingi, around the Japanese Islands. Mar. Ecol. Prog. Ser. 276, 161-172 (2004)
４５．Okutani1,T., S.Kojima and D.Kim: A New Calyptogena Clam (Bivalvia: Vesicomyidae) from the Southwest Pacific. Venus 63, 29-32 (2004)
４６．Watanabe, H., S. Tsuchida, K. Fujikura, H. Yamamoto, F. Inagaki, M. Kyo and S. Kojima: Population history associated with hydrothermal vent activity inferred from the genetic structure of neoverrucid barnacles around Japan. Mar. Ecol. Prog. Ser. 288, 
	233-240 (2005)
４７．Urakawa, H., N. Dubilier, Y. Fujiwara, D. E. Cunningham, S. Kojima and D. A. Stahl: Hydrothermal vent gastropods affiliate with the same family (Provannidae) harbor phylogenetically distant ε- and γ- proteobacterial chemosymbionts, suggesting independent 
	origins of these endosymbionts. 	Environ. Microbiol. 7, 750-754 (2005)
４８．Kojima, S. K. Fujikura and T. Okutani: Genetic differentiation of two vesicomyid bivalves, Calyptogena okutanii and Calyptogena nankaiensis between seep areas off the central Honshu and hydrothermal vent fields in the Okinawa Trough. Venus 64, 45-53 (2005)
４９．Kojima, S., S. Kamimura, A. Iijima, T. Kimura, K. Mori, I. Hayashi and T. Furota: Phylogeography of the endangered tideland snail Batillaria zonalis in the Japanese and Ryukyu Islands. Ecol. Res. 20, 686-694 (2005)
５０．Suzuki, Y., S. Kojima, T. Sasaki, M. Suzuki, T. Utsumi, H. Watanabe, H. Urakawa, S. Tsuchida, T. Nunoura, H. Hirayama, K. Takai, K. H. Nealson and K. Horikoshi: Host-symbiont relationships in hydrothermal vent gastropods of the genus Alviniconcha 
	from the South West Pacific. Appl. Environ. Microbiol. 72, 1388-1393 (2006)
５１．Kojima, S., S. Kamimura, A. Iijima, T. Kimura, T. Kurozumi and T. Furota: Molecular phylogeny and population structure of tideland snails in the genus Cerithidea around Japan. Mar. Biol. 149,525-535 (2006)
５２．Suzuki, Y., S. Kojima, H. Watanabe, M. Suzuki, S. Tsuchida, T. Nunoura, H. Hirayama, K. Takai, K. H. Nealson and K. Horikoshi: Single host and symbiont lineages of hydrothermal vent gastropods of the genus Ifremeria (Provannidae): biogeography and 
	evolution. Mar. Ecol. Prog. Ser. 351, 167-175 (2006)
５３．Miura, T. and S. Kojima: Two new species of vestimentiferan tubeworms (Polychaeta, Siboglinidae a.k.a. Pogonophora) from the Brothers Caldera, the Kermadec Arc, South Pacific Ocean. Species Diversity 11, 209-224 (2006)
５４．Kojima, S., E. Tsuchida, H. Numanami, K. Fujikura and T. Okutani: Synonymy of Calyptogena solidissima with Calyptogena kawamurai (Bivalvia: Vesicomyidae) and its population structure revealed by nucleotide sequences of mitochondrial DNA. 	Zool. Sci. 
	23, 835-842 (2006)
５５．Kojima S., H. Watanabe, S. Tsuchida, K. Fujikura, A. A. Rowden, K. Takai and T. Miura: Phylogenetic relationships of a tube worm (Lamellibrachia juni) from three hydrothermal vent fields in the South Pacific. J. Mar. Biol. Ass. U.K. 86, 1357-1361 (2006)
５６．Watanabe, H., R. Kado, M. Kaida, S. Tsuchida and S. Kojima: Dispersal of vent-barnacle (genus Neoverruca) in the Western Pacific. Cah. Biol. Mar. 47, 353-357 (2006)
５７．Inoue, N., H. Watanabe, S. Kojima and H. Sekiguchi: Population structure of the Japanese spiny lobster Panulirus japonicus inferred by nucleotide sequence analysis of the mitochondrial COI gene. Fishery Sci., 73, 550-556 (2007)
５８．Watanabe, H., J. T. Høeg, B. K. K. Chan, R. Kado, S. Kojima and A. Sari: First report of antennular attachment organs in a barnacle nauplius larva.J. Zool., 284-291 (2008)
５９．Kojima, S., S. Ozeki, A. Iijima, K. Okoshi, T. Suzuki, I. Hayashi and T. Furota: Genetic characteristics of three recently discovered populations of the tideland snail Cerithidea djadjariensis (Martin) (Mollusca, Gastropoda) from the Pacific coast of the eastern Japan. 
	Plankton Benthos Res., 3, 96-100 (2008)
６０．Kodama, Y., T. Yanagimoto, G. Shinohara, I. Hayashi and S. Kojima: Deviation age of a deep-sea demersal fish, Bothrocara hollandi, between the Japan Sea and the Okhotsk Sea. Mol. Phylogenet. Evol., 49, 682-687 (2008)
６１．Kojima, S., M. Moku and K. Kawaguchi: Genetic diversity and population structure of three dominant myctophid fishes (Diaphus theta, Stenobrachius leucopsarus, and S. nannochir) in the North Pacific Ocean. J. Oceanogr., 65, 187-193 (2009)
６２．Adachi, T., S. Hagihara, M. Itoh, G. Shinohara, I. Hayashi and S. Kojima: Genetic population structure and morphological characters of Japanese psychrolutids of genus Malacocottus (Scorpaeniformes: Psychrolutidae). Ichthyol. Res., 56, 323-329 (2009)
６３．Kodama, Y. and S. Kojima: The population history of the deep-sea demersal fish Bothrocara hollandi in the Japan Sea revealed by tandem repeat units in the mitochondrial non-coding region. Plankton Benthos Res., 4, 115-119 (2009)
６４．Kojima, S.: Extensive Mitochondrial Genome Rearrangements between Cerithioidea and Hypsogastropoda (Mollusca; Caenogastropoda) as Determined from the Partial Nucleotide Sequences of the Mitochondrial DNA of Cerithidea djadjariensis and Batillaria cumingi.
	 Zool. Sci., 27, 494-498 (2010)
６５．Raynold, K. C., Watanabe, H., Sasaki, T., Strong, E., Young, C. M., Kim, S., Uematsu, K., Miyake, H., Kojima, S., Suzuki, Y. and Fujikura K.: Internal brooding and a novel larval form in a deep-sea hydrothermal vent gastropod. Biol. Bull., 219,7-11 (2010) 
６６．Kamimura, S., H. Itoh, S. Ozeki and S. Kojima: Molecular phylogeny of Cerithidea gastropods inhabiting Suncheon Bay, and the Japanese and Ryukyu Islands. Plankton Benthos Res., 5(Suppl.), 250-254  (2010) 
６７．Itoh, M., K. Kawamura, T. Kitahashi, S. Kojima, H. Katagiri and M. Shimanaga: Bathymetric patterns of meiofaunal abundance and biomass 1 associated with the Kuril and Ryukyu trenches, western North Pacific Ocean. Deep-Sea Res. I, 56, 86-97 (2011)
６８．Okutani, T., S. Kojima, M. Kawata, E. Seo and K. Fujikura: Another addition of vesicomyid clam from deep-sea seeps off Sanriku Coast and in Sagami Bay, Japan (Mollusca: Bivalvia). Venus, 69, 135-144 (2011)
６９．Kojima, S., R. Maeda, K. Sakuma, Y. Kokubu, S. Hagihara and M. Itoh: Genetic characterization of the northwestern Pacific population of a deep-sea demersal fish, Bothrocara hollandi. Plankton Benthos Res., 6, 108-114 (2011)
７０．今村陽一郎・小関祥子・宮島利宏・風呂田利夫・小島茂明：多摩川河口干潟に優占する十脚甲殻類３種の生息場所による食性の変化．日本ベントス学会誌　66, 40-47 (2011)
７１．Kitahashi, T., K. Kawamura, G. Veit-Köhler, R. Danovaro, J. Tietjen, S. Kojima and M. Shimanaga: Assemblages of Harpacticoida (Crustacea: Copepoda) from the Ryukyu and Kuril Trenches, Northwest Pacific Ocean. Jour. Mar. Biol. Ass. U.K. 92, 275-286（2012）
７２．Yorisue, T., Inoue, K., Miyake, H., Kojima、S.: Trophic  structure of hydrothermal vent communities at the Myojin Knoll and the Nikko Seamount in the northwestern Pacific: Implications for photosynthesis-derived food supply. Plankton Benthos Res. 7, 35-40 (2012)
７３．Yorisue, T., K. Matsumura, H. Hirota, N. Dohmae and S. Kojima: Possible molecular mechanisms of species recognition by barnacle larvae inferred from multi-specific sequencing analysis of proteinaceous settlement-inducing pheromone. Biofouling 28, 605-611 (2012)
７４．Kojima, S., S. Murakami, S. Nemoto, H. Watanabe, H. Miyake and S. Tsuchida: Genetic diversity and population structure of a vestimentiferan annelid Lamellibrachia satsuma in Japanese and northern Mariana waters. Plankton Benthos Res. 7, 146-150 (2012)
７５．Hidaka, H, Watanabe H, Kano Y, Kojima S: Mitochondrial genome rearrangement in a hydrothermal vent-endemic lineage of provannid gastropods provides a new DNA marker for phylogeographical studies. Jour Mar Biol Ass UK, 93, 1053-1058 (2013)
７６．Yorisue, T., R. Kado, H. Watanabe, J. T. Høeg, K. Inoue,  S. Kojima and K. K. Benny: Influence of water temperature on the larval development of Neoverruca sp.and Ashinkailepas seepiophila – implications for larval dispersal and settlement in the vent and 
	seep environments. Deep-Sea Res. I, 71, 33-37 (2013)
７７．Watanabe, H., E. Seo, Y. Takahashi, T. Yoshida, S. Kojima, K. Fujikura and H. Miyake: Spatial distribution of sister species of vesicomyid bivalves Calyptogena okutanii and Calyptogena soyoae along an environmental gradient, in chemosynthetic biological 
	communities in Japan. J. Oceanogr., 69, 129-134 (2013)
７８．Kitahashi, T., K. Kawamura, S. Kojim and M. Shimanaga: Assemblages gradually change from bathyal to hadal depth: A case study on harpacticoid copepods around the Kuril Trench (north-west Pacific Ocean). Deep-Sea Res. I, 74, 39-47 (2013)
７９．Itoh, H., S. Kamimura, H. Takeshima and S. Kojima: Isolation and characterization of microsatellite loci in the Asian horn snail Batillaria attramentaria (Mollusca, Gastropod).  Mol. Ecol. Resources, http://tomato.bio.trinity.edu/manuscripts/13-4/mer-13-0029.pdf  (2013)
８０．Mino, S., H. Maikita, T. Toki, J. Miyazaki, S. Kato, H. Watanabe, H. Imachi, T. Watsuji, T. Nunoura, S. Kojima, T. Sawabe, K. Takai and S. Nakagawa: Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific. 
	Fromt. Microbiol., 4, 107. doi: 10.3389/fmicb.2013.00107 (2013) (2013)
８１．Seo, M., S. Koyama, T. Toyofuku, S. Kojima and H. Watanabe: Determination of extremely high pressure tolerance of brine shrimp larvae by using a new pressure chamber system. Zool. Sci., 30,919-923 (2013)
８２．Itoh, H., S. Kamimura, K. Hirose and S. Kojima: Isolation and characterization of microsatellite loci in the intertidal snail Batillaria multiformis (Mollusca Gastropoda). Conserv. Genet. Resour.,  6, 193-195 (2014)
８３．Hirose, K., T. Yorisue, H. Itoh, T. Yamamoto and S. Kojima: Multiplex PCR-based genotyping of mitochondrial DNA from two species of the genus Batillaria (B. multiformis and B. flectosiphonata) from Amami-Oshima, Japan. Plankton Benthos Res., 9, 67-70 (2014)
８４．Kojima, S., K. Sakuma and T. Yanagimoto: Contrasting genetic population structures between congeneric flounder species, Hippoglossoides dubius and H. pinetorum. Plankton Benthos Res., 9, 99-104 (2014)
８５．Sakuma, S., Y. Ueda, T. Hamatsu and S. Kojima: Contrasting population history of deep-sea demersal fish, Lycodes matsubarai in the Sea of Japan and the Sea of Okhotsk. Zool. Sci., 31, 375-382 (2014)
８６．Kitahashi, T., K. Kawamura, S. Kojima and M. Shimanaga:Bathymetric patterns of α and β diversity of harpacticoid copepods at the genus level around the Ryukyu Trench, and turnover diversity between trenches around Japan. Prog. Oceanogr., 123, 54-63 (2014)
８７．Kitahashi, T., R. G. Jenkins, H. Nomaki, M. Shimanaga,  K. Fujikura and S. Kojima: Effect of the 2011 Tohoku Earthquake on deep-sea meiofaunal assemblages inhabiting the landward slope of the Japan Trench. Mar. Geol., 358, 128-137 (2014)
８８．Orui-Sakaguchi, S., K. Takishita, T. Goto, H. Shibata, S. Kojima, S. Tsuchida, H. Kitazato and K. Fujikura: Analyses of age and population genetic structure of the broadbanded thornyheadSebastolobus macrochir in North Japan suggest its broad dispersion 
	and migration before settlement. Jour Oceanogr.,  70, 457-462 (2014) 
８９．Yahagi, T., H. Watanabe, S. Kojima, G Beedessee and T. Komai: First record and a new species of Alvinocaris Williams & Chace, 1982 (Crustacea: Decapoda: Caridea: Alvinocarididae) from the Indian Ocean. Zootaxa, 3893, 101-113 (2014)
９０．Hidaka, H., T. Ogura, H. Watanabe, Y. Kano and S. Kojima: Population history of a hydrothermal vent-endemic gastropod Alviniconcha hessleri in the Mariana Trough. In J. Ishibashi, K. Okino and M. Sunamura (eds.) 
	“Subseafloor Biosphere Linked to Global Hydrothermal Systems; TAIGA Concept” 325-333 (2015)
９１．Sakuma, K., Y. Ueda, M. Ito and S. Kojima: Demographic histories of two deep-sea eelpouts, Lycodes japonicus and L. ocellatus: palaeoenvironmental implications of the western North Pacific deep waters. Ichthyol. Res., 62, 363-367 (2015)
９２．Noguchi, T., K. Sakuma, T. Kitahashi, H. Itoh, Y. Kano, G. Shinohara, J. Hashimoto and S. Kojima: No genetic deviation between two morphotypes of the snipefishes (Macroramphosidae: Macroramphosus) in Japanese waters. Ichthyol. Res., 62, 368-373 (2015)
９３．Itoh, H., S. Kamimura, K. Hirose and S. Kojima: Characterization of polymorphic microsatellite for the tideland snail Batillaria flectosiphonata. Conserv. Genet. Resour., 7, 751-753 (2015)
９４．Yahagi, T., H. Watanabe, J. Ishibashi, S. Kojima: Genetic population structure of four hydrothermal vent shrimp species (Alvinocarididae) in the Okinawa Trough, Northwest Pacific. Mar. Ecol. Prog. Ser. ,529, 159-169 (2015)
９５．Hayakawa,H., Q. D. Le, M. Kinoshita, Y. Takehana, K. Sakuma, H. Takeshima, S. Kojima, K. Naruse and K. Inoue: Genetic similarity of the Hainan Medaka populations collected from hyper- and hypo-osmotic environments in northern Vietnam. Ocean. 
	Sci. Jour., 50, 231-235 (2015)
９６．Kobayashi, G., T. Miura and S. Kojima: Lamellibrachia sagami sp. nov., a new vestimentiferan tubeworm (Annelida: Siboglinidae) from Sagami Bay and several sites in the northwestern Pacific Ocean. Zootaxa, 4018, 097-108 (2015)
９７．Watanabe, H., T. Yahagi, Y. Nagai, M. Seo, S. Kojima, J. Ishibashi, H. Yamamoto, K. Fujikura, S. Mitarai and T. Toyofuku: Different thermal effect for brooding and larval dispersal of two neighboring distributed shrimps in deep-sea hydrothermal vent field. Mar Ecol, 
	37, 1282-1289 (2016)
９８．Kitahashi, T., H. Watanabe, K. Ikehara, R. G. Jenkins, S. Kojima and M. Shimanaga: Deep-sea meiofauna off the Pacific coast of Tohoku and other trench slopes around Japan: A comparative study before and after the 2011 off the Pacific coast of Tohoku Earthquake. 
	Jour. Oceanogr., 72, 129-139 (2016)
９９．Yorisue, T., B. Chan, R. Kado, H. Watanabe, K. Inoue, S. Kojima and J. Høeg: On the morphology of antennular sensory and attachment organs in cypris larvae of the deep-sea vent/seep barnacles, Ashinkailepas and Neoverruca. Jour. Morphol., 277, 594-602 (2016)
１００．Noguchi, T., T. Kitahashi, G. Shinohara, J Hashimoto and S. Kojima: Morphological differences among snipefishes (Macroramphosidae: Macroramphosus) from the Pacific and Atlantic oceans. Plankton Benthos Res., 11, 147-150 (2016)
１０１．Seo, E., T. Sazi, M. Togawa, O. Nagata, M. Murakami, S. Kojima and Y. Seo: A portable infrared photoplethysmograph: Heartbeat of Mytilus galloprovincialis analyzed by MRI and application to Bathymodiolus septemdierum. Biol. Open, 5, 1752-1757 (2016)
１０２．Mino, S., S. Nakagawa, H. Makita, T. Toki, J. Miyazaki, S. Sievert, M. Polz, F. Inagaki, A. Godfroy, S. Kato, H. Watanabe, T. Nunoura, K. Nakamura, H. Imachi, T. Watsuji, S. Kojima, K. Takai and T. Sawabe: Endemicity of the cosmopolitan mesophilic 
	chemolithoautotroph Sulfurimonas at deep-sea hydrothermal vents. ISME Jour., 11, 909-919 (2017)
１０３．Miura, O., G. Kanaya, S. Nakai, H. Itoh, S. Chiba, W. Makino, T. Nishimura, S. Kojima and J. Urabe: Ecological and genetic impact of the 2011 Tohoku Earthquake Tsunami on intertidal mud snails. Sci. Rep., 7, 44375.(2017)   プレスリリース
１０４．Yahagi, T., H. Kayama Watanabe, S. Kojima and Y. Kano: Do larvae from deep-sea hydrothermal vents disperse in surface waters? Ecology, 98, 1524-1534 (2017)
１０５．Kobayashi, G. and S. Kojima: First record of Protomystides hatsushimaensis (Annelida: Phyllodocidae) inhabiting vacant tubes of vestimentiferan tubeworms. Marine Biodiversity Records, 10, 25 (2017)
１０６．Takada, Y., K. Sakuma, T. Fujii and S. Kojima: Phylogeography of the sandy beach amphipod Haustorioides japonicus along the Sea of Japan: paleogeographical signatures of cryptic regional divergences. Estuar. Coast. Shelf Sci., 200, 19-30 (2018)
１０７．Ijichi, M., T. Takano, M. Hasegawa, H. Yashiki, K. Kogure, S. Kojima and S. Yoshizawa: The complete mitochondrial genome of the longfin dragonfish Tactostoma macropus (Stomiiformes: Stomiidae). Mitochondrial DNA Part B., 3, 486-487 (2018)
１０８．Chen, C., T. Okutani, H. Kayama Watanabe and S. Kojima: The First Cuspidariid Bivalve associated with Hydrothermal Vents Discovered from the Southern Mariana Trough. Venus, 76, 39-44 (2018)
１０９．Kobayashi, G., R. Goto, T. Takano and S. Kojima: Molecular phylogeny of Maldanidae (Annelida): multiple losses of tube-capping plates and evolutionary shifts in habitat depth. Mol. Phyleneget. Evol. 127, 332-344 (2018)
１１０．Ogura, T., H. Watanabe, T. Sasaki, H. Fukumori, S. Honma, S. Kojima, J. Ishibashi and K. Fujikura: Population history of deep-sea vent and seep Provanna snails (Mollusca: Abyssochrysoidea) in the northwestern Pacific. Peer J. 6, e5673 (2018)
１１１．Kitahashi, T., R. Jenkins, S. Kojima and M. Shimanaga: High resilience of harpacticoid copepods in the landward slope of the Japan Trench against disturbance of the 2011 Tohoku Earthquake. Limnol. Oceanogr. 63, 2751-2761 (2018)
１１２．Kobayashi, G., R. Mukai, I. Alalykina, T. Miura and S. Kojima S: Population connectivity of benthic invertebrates in deep waters: a case study of Sternaspis cf. williamsae (Annelida: Sternaspidae) from deep waters of the northwestern Pacific. Deep-Sea Res. II 154, 159-166 (2018)
１１３．Terada, R., T. Takano, K. Sakuma, Y. Narimatsu and S. Kojima: Phylogeography of the North Pacific lightfish Maurolicus japonicus. Plankton Benthos Res. 13, 180-184 (2018)
１１４．Kido, M., H. Itoh, G. Shinohara and S. Kojima: Cryptic speciation of a deep-sea demersal fish of the genus Bothrocara in the Japan Sea. Zool. Sci. 37, 24-30 (2020)
１１５．Sato, M., T. Ebihara, K. Satake, S. Kojima, H. Fukumori and S. Angsupanich: Distributions and variations of two estuarine species of Composetia (Annelida: Nereididae) in the Ryukyu Islands, southern Japan, with a new record of Composetia tokashikiensis 
	from Thailand. Species Diversity, 25, 25-38 (2020)
１１６．Yoshino, K., K. Mori, G. Kanaya, S. Kojima, Y. Henmi, A.Matsuyama and M. Yamamoto: Food sources are more important than biomagnification on mercury bioaccumulation in marine fishes. Environ. Pollut, 262, 113982 (2020)
１１７．Shinohara, G., S. Kojima and H. Fukumori: Deep-sea fishes from the Kurile-Kamchatka Trench collected by the R/V Sonne during the KuramBio II Expedition in 2016. Prog. Oceanogr., 183, 102275 (2020) (2020)
１１８．Yashiki, H., S. Takami (contributed equally), F. Spahn, K. Sakuma, H. Itoh, T. Hamatsu, Y. Narimatsu, T. Yanagimoto and S. Kojima: Inbreeding between deep-sea snailfishes Careproctus pellucidus and Careproctus rastrinus in the northwestern Pacific Ocean. 
	Zool Sci, 37, 323-330 (2020)
１１９．Ohta, M., S. Kojima and M. Shimomura: A new species of Janirella Bonnier, 1896 (Isopoda: Asellota: Janirellidae) from western Japan Trench. Crust Res, 49, 89-97 (2020)
１２０．Watanabe, H. K., C. Chen, S. Kojima, S. Kato and H. Yamamoto: Population connectivity of a deep-sea hot vent crab, Gandalfus yunohana (Takeda, Hashimoto & Ohta, 2000) in the northwestern Pacific. Jour Crust Biol, 40, 556-562 (2020)
１２１．Sakuma, K., Y. Ueda, K. Fujiwara, T. Kodama, H. Kurihara, G. Shinohara and S. Kojima: Contrast across a boundary: differing histories of two eelpout populations on a continuous continental slope. Deep-Sea Res I,165, 103399 (2020)
１２２．Kobayashi, G., H. Itoh, H. Fukuda and S. Kojima: The complete mitochondrial genome of the sand bubbler crab Scopimera globosa and its phylogenetic position. Genomics, 113, 831-839 (2021)
１２３．Kobayashi, G. and S. Kojima: Travisia sanrikuensis, a new species of Travisiidae (Annelida) from the lower bathyal zone of the northwestern Pacific. Species Diversity, 26, 131-139 (2021)
１２４．Takami, S., H. Yashiki, T. Yahagi, K. Sakuma, H. Itoh, Y. Ueda and S. Kojima: Quantitative evaluation of color morphotypes in a deep-sea snailfish, Careproctus trachysoma in the Japan Sea and their genetic and environmental backgrounds. Plankton Benthos Res., 17, 76-82
１２５．Kobayashi G, Itoh H, Kojima S: Mitogenome of a stink worm (Annelida: Travisiidae) includes degenerate group II intron that is also found in five congeneric species. Sci Rep, 12, 4449 (2022)
１２６．Yamamura, H., H. Itoh, C. Shinzato, S. Tsuchida, T. Yamamoto and S. Kojima: Genetic structure of a vestimentiferan Lamellibrachia satsuma revealed by microsatellite analyses. Plankton Benthos Res, 17, 201-207 (2022) 
１２７．Kato, S., H. Itoh (contributed equally), H. Fukumori, N. Nakajima, G. Kanaya and S. Kojima: The mitochondrial genome of a threatened tideland snail Pirenella pupiformis (Mollusca: Caenogastropoda: Potamididae) determined by shotgun sequencing. Mitochondrial DNA 
	Part B: Resources, 7, 632-634 (2022)
１２８．Hirose, K., H. Itoh, T. Takano, T. Yamamoto and S. Kojima: Reproductive isolation and a change in the development mode of the tideland snail Batillaria flectosiphonata (Gastropoda: Batillaridae). Zool. Sci., 39, 413-418 (2022)
１２９．Kobayashi G., H. Itoh, G. Kanaya, H. Abe and S. Kojima: Genetically isolated population of the coastal species with high dispersal potential: the case of the sentinel crab Macrophthalmus japonicus (Brachyura: Macrophthalmidae) in Japan. Plankton Benthos Res., 18, 13-20 
１３０．Kato S, Ohta M, Fukumori H, Hsu T, Chan T, Kojima S: Geographic distribution and genetic structures of Pirenella tideland snails in Taiwan and Japan. Zool. Stud., 62, 43 (2023)
１３１．Kamei, H, K. Okamoto, M. Ohta, H. Itoh, H. Kayama Watanabe, H. Komatsu and S. Kojima: Discovery and genetic characterization of a vestimentiferan, Lamellibrachia satsuma, from the submarine volcano Omuro Dashi in the Izu-Ogasawara Arc. Zool. Sci., 40, 437-443 (2023)
１３２．Ohta, M, T. Takano and S. Kojima: A new species of Janiralata Menzies, 1951 (Isopoda: Janiridae) from Japanese  bathyal waters, with a review of the associations with invertebrates among species of Janiralata. J. Crust. Biol., ruad049 (2023)
１３３．Brandt, A., F. Bergmeier, A. Casaubon, Y. Kano, A. Kelch, H. Knauber, K. Okamoto, M. Ohta, S. Shiraki, D. Yamamoto and S. Kojima: Benthos meets plankton: Isopods sampled in the Japan Trench by means of plankton nets fixed to large bottom trawls. Mar. Biodivers., 54, 49 (2024)
１３４．Nomaki, H., S. Kojima, Y. Miyairi, Y. Yokoyama, C Chen: Natural 14C abundances and stable isotopes suggest discrete uptake routes for carbon and nitrogen in cold seep animals. Prog. Earth Planet. Sci. 11, 51 (2024)
１３５．Yamamoto, D., T. Yahagi and S. Kojima: Bathymetric distribution of abyssal and hadal amphipod families and genera in the Japan Trench and the southernmost Kuril-Kamchatka Trench. Deep-Sea Res I, accepted

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